PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004503948.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C3H
Protein Properties Length: 816aa    MW: 90714.2 Da    PI: 8.5974
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004503948.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.73.1e-06147167526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +Cr+fa  G C++G+ C+F H 
  XP_004503948.1 147 PCRDFAV-GNCRRGSHCHFLHH 167
                     8******.*************6 PP

2zf-CCCH17.95.4e-06270291426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      +C+ f+++G C+ G  C+F+H+
  XP_004503948.1 270 TPCK-FFAFGNCRNGKDCRFSHD 291
                     5899.8888*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.333142169IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-4143168IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-5146168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.174201229IPR000571Zinc finger, CCCH-type
SMARTSM003560.05202227IPR000571Zinc finger, CCCH-type
SMARTSM003569.6E-4266292IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.84267293IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.02E-5269291IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 816 aa     Download sequence    Send to blast
MSGSCRKLSS KWDSGDESEF ASESVTNSNN SRRPYLASND MIKPRMEFLS KEPFSGGRGS  60
NRDDVRNEDY RVFDATIAQG TDGSYDMDIS PGFEEWKNRK HGQSAKDDYG SAMSRRSRSH  120
SRSPPRGFKY SAVDERNRTR AGRTAQPCRD FAVGNCRRGS HCHFLHHDNQ SYEDSRESRH  180
RQDGPRYSNS RESGDYSLAS QRSNEACINF AKGRCRTGES CKYVHHGNSD GFDNKVSADE  240
SSRQREIDRR RSDNSFKQGG QHYPNHSGNT PCKFFAFGNC RNGKDCRFSH DRQAFTSPIG  300
RLRDDRSRSN QGEDQVLGRP KISDSVIPNG RPRDDRWGSD GSMADVGKVW DGPKQNDLVA  360
VSDTAKMVED NKNGIIGAAE PGFIAWPMSD RRDHSFDKNI VHNESPFSID KKEGNCSKAE  420
NATDNILISQ SVGGGIWPGD ETMSPDWNYG ARSSSHVNDE HGQNKQQVAP GQGLIQNSQN  480
ISASQVVGQS QTTVSIVTPR ARIIESIQNQ EHSTEKNYIV EPNTMNASLS QISSRNTPTQ  540
NVVSKEQLAQ LSCLSASLAH ILGTDQKLPQ LHSTSNSYDA KDTLFGSKIE GSGDPVSLTF  600
IKPDPAIGLK QYDTMCDSMG PKNTNASVVP PTFSPIKIPK NAVEIPPQLS NLGQSFDDSR  660
KTAISEEPHV KNEHLFHLQL CENIKVQNET SKIVAEEKPS SQSENKITKE NSPLGNMDQN  720
VGPEDAKKTK DAKGTRAFKI SLVELIKELL KPTWKDGKIT KEDYKAIVKK VTDKVTGTVQ  780
RVHIPQTQEK IDRYLSVSKP KLIKLVQAYV EKAQKA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004503948.10.0PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1
TrEMBLG7LE040.0G7LE04_MEDTR; Uncharacterized protein
STRINGGLYMA04G39221.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40993252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.14e-13C3H family protein